3D structure

PDB id
5WE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
5WE6|1|A|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5WE6_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0831
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5WE6|1|A|C|1833
5WE6|1|A|U|1834
5WE6|1|A|2MG|1835
*
5WE6|1|A|C|1905
5WE6|1|A|G|1906
*
5WE6|1|A|C|1924
5WE6|1|A|C|1925
5WE6|1|A|U|1926
5WE6|1|A|A|1927
5WE6|1|A|A|1928
5WE6|1|A|G|1929
5WE6|1|A|G|1930
5WE6|1|A|U|1931
5WE6|1|A|A|1932
5WE6|1|A|G|1933
*
5WE6|1|A|C|1967
5WE6|1|A|G|1968
5WE6|1|A|A|1969
5WE6|1|A|A|1970
5WE6|1|A|U|1971
5WE6|1|A|G|1972

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain v
Transfer RNA; tRNA

Coloring options:


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