J4_5WF0_004

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5WF0|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WF0_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.064

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5WF0|1|A|G|1310
5WF0|1|A|G|1311
5WF0|1|A|U|1312
5WF0|1|A|U|1313
5WF0|1|A|C|1314
*
5WF0|1|A|G|1338
5WF0|1|A|G|1339
5WF0|1|A|U|1340
5WF0|1|A|G|1341
5WF0|1|A|A|1342
5WF0|1|A|G|1343
*
5WF0|1|A|C|1404
5WF0|1|A|U|1405
*
5WF0|1|A|A|1597
5WF0|1|A|A|1598
5WF0|1|A|U|1599
5WF0|1|A|C|1600
5WF0|1|A|G|1601
5WF0|1|A|U|1602
5WF0|1|A|A|1603
5WF0|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23