J4_5WF0_015
3D structure
- PDB id
- 5WF0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- G(4SU)GG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 5WF0|1|w|4SU|8, 5WF0|1|w|U|47, 5WF0|1|w|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5WF0_015 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.5219
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5WF0|1|w|G|7
5WF0|1|w|4SU|8
5WF0|1|w|G|9
5WF0|1|w|G|10
*
5WF0|1|w|C|25
5WF0|1|w|G|26
5WF0|1|w|U|27
5WF0|1|w|C|28
*
5WF0|1|w|G|42
5WF0|1|w|A|43
5WF0|1|w|A|44
5WF0|1|w|G|45
5WF0|1|w|A|46
5WF0|1|w|U|47
5WF0|1|w|C|48
5WF0|1|w|G|49
*
5WF0|1|w|C|65
5WF0|1|w|C|66
Current chains
- Chain w
- tRNA-fMet
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
Coloring options: