J4_5WFK_004

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5WFK|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WFK_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0666

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5WFK|1|A|G|1310
5WFK|1|A|G|1311
5WFK|1|A|U|1312
5WFK|1|A|U|1313
5WFK|1|A|C|1314
*
5WFK|1|A|G|1338
5WFK|1|A|G|1339
5WFK|1|A|U|1340
5WFK|1|A|G|1341
5WFK|1|A|A|1342
5WFK|1|A|G|1343
*
5WFK|1|A|C|1404
5WFK|1|A|U|1405
*
5WFK|1|A|A|1597
5WFK|1|A|A|1598
5WFK|1|A|U|1599
5WFK|1|A|C|1600
5WFK|1|A|G|1601
5WFK|1|A|U|1602
5WFK|1|A|A|1603
5WFK|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23