J4_5WIT_016
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGA(4SU)AG*CAG*CGU(7MG)UCCUU*GAGUCC
- Length
- 24 nucleotides
- Bulged bases
- 5WIT|1|1y|4SU|8, 5WIT|1|1y|U|47, 5WIT|1|1y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WIT|1|1y|G|5
5WIT|1|1y|G|6
5WIT|1|1y|A|7
5WIT|1|1y|4SU|8
5WIT|1|1y|A|9
5WIT|1|1y|G|10
*
5WIT|1|1y|C|25
5WIT|1|1y|A|26
5WIT|1|1y|G|27
*
5WIT|1|1y|C|43
5WIT|1|1y|G|44
5WIT|1|1y|U|45
5WIT|1|1y|7MG|46
5WIT|1|1y|U|47
5WIT|1|1y|C|48
5WIT|1|1y|C|49
5WIT|1|1y|U|50
5WIT|1|1y|U|51
*
5WIT|1|1y|G|63
5WIT|1|1y|A|64
5WIT|1|1y|G|65
5WIT|1|1y|U|66
5WIT|1|1y|C|67
5WIT|1|1y|C|68
Current chains
- Chain 1y
- E-site tRNA
Nearby chains
- Chain 16
- 50S ribosomal protein L33
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
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