J4_5WIT_018

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIT_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0951

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5WIT|1|2A|C|297
5WIT|1|2A|G|298
5WIT|1|2A|A|299
5WIT|1|2A|A|300
5WIT|1|2A|G|301
*
5WIT|1|2A|C|316
5WIT|1|2A|G|317
5WIT|1|2A|C|318
5WIT|1|2A|C|319
*
5WIT|1|2A|G|323
5WIT|1|2A|A|324
5WIT|1|2A|G|325
*
5WIT|1|2A|C|337
5WIT|1|2A|G|338
5WIT|1|2A|U|339
5WIT|1|2A|A|340
5WIT|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24