J4_5WIT_023

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIT_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0526

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WIT|1|2A|G|1772
5WIT|1|2A|A|1773
5WIT|1|2A|C|1774
5WIT|1|2A|U|1775
5WIT|1|2A|G|1776
*
5WIT|1|2A|C|1788
5WIT|1|2A|A|1789
5WIT|1|2A|C|1790
5WIT|1|2A|A|1791
5WIT|1|2A|G|1792
*
5WIT|1|2A|C|1827
5WIT|1|2A|G|1828
5WIT|1|2A|A|1829
5WIT|1|2A|C|1830
*
5WIT|1|2A|G|1975
5WIT|1|2A|U|1976
5WIT|1|2A|A|1977
5WIT|1|2A|A|1978
5WIT|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA