J4_5WLC_001

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAACGG*CCGG

Length

23 nucleotides

Bulged bases

5WLC|1|L1|A|359, 5WLC|1|L1|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WLC|1|L1|C|99
5WLC|1|L1|A|100
5WLC|1|L1|U|101
5WLC|1|L1|U|102
5WLC|1|L1|A|103
5WLC|1|L1|A|104
5WLC|1|L1|A|105
5WLC|1|L1|U|106
5WLC|1|L1|C|107
*
5WLC|1|L1|G|307
5WLC|1|L1|C|308
5WLC|1|L1|C|309
*
5WLC|1|L1|G|357
5WLC|1|L1|U|358
5WLC|1|L1|A|359
5WLC|1|L1|A|360
5WLC|1|L1|C|361
5WLC|1|L1|G|362
5WLC|1|L1|G|363
*
5WLC|1|L1|C|381
5WLC|1|L1|C|382
5WLC|1|L1|G|383
5WLC|1|L1|G|384

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L8

rpS8_eS8

Chain LD

rpS11_uS17

Chain NC

Lcp5