J4_5X6B_001

3D structure

PDB id

5X6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUAGU*GCAGC*GCCUUACG*CC

Length

20 nucleotides

Bulged bases

5X6B|1|P|A|25, 5X6B|1|P|U|45

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_80682.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5X6B|1|P|G|7
5X6B|1|P|U|8
5X6B|1|P|A|9
5X6B|1|P|G|10
5X6B|1|P|U|11
*
5X6B|1|P|G|23
5X6B|1|P|C|24
5X6B|1|P|A|25
5X6B|1|P|G|26
5X6B|1|P|C|27
*
5X6B|1|P|G|41
5X6B|1|P|C|42
5X6B|1|P|C|43
5X6B|1|P|U|44
5X6B|1|P|U|45
5X6B|1|P|A|46
5X6B|1|P|C|47
5X6B|1|P|G|48
*
5X6B|1|P|C|64
5X6B|1|P|C|65

Current chains

Chain P

tRNACys

Nearby chains

Chain F

Uncharacterized protein MJ1481

Chain I

O-phospho-L-seryl-tRNA:Cys-tRNA synthase

Chain J

O-phospho-L-seryl-tRNA:Cys-tRNA synthase