J4_5XYM_001

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

5XYM|1|A|U|319, 5XYM|1|A|U|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|C|272
5XYM|1|A|U|273
5XYM|1|A|A|274
5XYM|1|A|A|275
5XYM|1|A|A|276
5XYM|1|A|C|277
*
5XYM|1|A|G|315
5XYM|1|A|G|316
5XYM|1|A|G|317
5XYM|1|A|U|318
5XYM|1|A|U|319
5XYM|1|A|G|320
*
5XYM|1|A|C|495
5XYM|1|A|U|496
5XYM|1|A|G|497
*
5XYM|1|A|U|512
5XYM|1|A|A|513
5XYM|1|A|A|514
5XYM|1|A|G|515

Current chains

Chain A

23S RNA

Nearby chains