J4_5XYM_003
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAUUAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5XYM|1|A|G|1389, 5XYM|1|A|U|1392, 5XYM|1|A|A|1393, 5XYM|1|A|U|1867, 5XYM|1|A|A|1868
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5XYM_003 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.5716
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5XYM|1|A|C|1388
5XYM|1|A|G|1389
5XYM|1|A|A|1390
5XYM|1|A|U|1391
5XYM|1|A|U|1392
5XYM|1|A|A|1393
5XYM|1|A|G|1394
*
5XYM|1|A|C|1412
5XYM|1|A|C|1413
*
5XYM|1|A|G|1866
5XYM|1|A|U|1867
5XYM|1|A|A|1868
5XYM|1|A|C|1869
*
5XYM|1|A|G|2236
5XYM|1|A|G|2237
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: