J4_5XYM_007

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5XYM|1|A|U|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5XYM_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0987

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5XYM|1|A|C|2053
5XYM|1|A|U|2054
5XYM|1|A|G|2055
*
5XYM|1|A|C|2132
5XYM|1|A|G|2133
*
5XYM|1|A|C|2151
5XYM|1|A|C|2152
5XYM|1|A|U|2153
5XYM|1|A|A|2154
5XYM|1|A|A|2155
5XYM|1|A|G|2156
5XYM|1|A|G|2157
5XYM|1|A|U|2158
5XYM|1|A|A|2159
5XYM|1|A|G|2160
*
5XYM|1|A|C|2194
5XYM|1|A|G|2195
5XYM|1|A|A|2196
5XYM|1|A|A|2197
5XYM|1|A|U|2198
5XYM|1|A|G|2199

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2