J4_5XYM_009

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AAACC*GAC*GGACA*UCUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|A|2869
5XYM|1|A|A|2870
5XYM|1|A|A|2871
5XYM|1|A|C|2872
5XYM|1|A|C|2873
*
5XYM|1|A|G|2901
5XYM|1|A|A|2902
5XYM|1|A|C|2903
*
5XYM|1|A|G|2958
5XYM|1|A|G|2959
5XYM|1|A|A|2960
5XYM|1|A|C|2961
5XYM|1|A|A|2962
*
5XYM|1|A|U|2996
5XYM|1|A|C|2997
5XYM|1|A|U|2998
5XYM|1|A|U|2999

Current chains

Chain A

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14