J4_5XYU_001

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

5XYU|1|A|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|G|111
5XYU|1|A|A|112
5XYU|1|A|G|113
5XYU|1|A|U|114
5XYU|1|A|A|115
5XYU|1|A|A|116
5XYU|1|A|C|117
5XYU|1|A|A|118
5XYU|1|A|C|119
*
5XYU|1|A|G|238
5XYU|1|A|G|239
5XYU|1|A|C|240
*
5XYU|1|A|G|286
5XYU|1|A|U|287
5XYU|1|A|A|288
5XYU|1|A|G|289
*
5XYU|1|A|C|311
5XYU|1|A|C|312

Current chains

Chain A

16S RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17