J4_5XYU_002
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5XYU|1|A|A|556, 5XYU|1|A|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5XYU_002 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0966
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5XYU|1|A|G|555
5XYU|1|A|A|556
5XYU|1|A|G|557
*
5XYU|1|A|C|744
5XYU|1|A|G|745
5XYU|1|A|A|746
5XYU|1|A|A|747
5XYU|1|A|A|748
5XYU|1|A|G|749
*
5XYU|1|A|C|790
5XYU|1|A|C|791
5XYU|1|A|G|792
5XYU|1|A|U|793
5XYU|1|A|A|794
5XYU|1|A|A|795
5XYU|1|A|A|796
5XYU|1|A|C|797
5XYU|1|A|G|798
5XYU|1|A|G|799
5XYU|1|A|U|800
5XYU|1|A|G|801
*
5XYU|1|A|C|861
5XYU|1|A|C|862
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S11
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain U
- Conserved domain protein
Coloring options: