J4_5ZEB_002

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZEB_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1247

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5ZEB|1|A|G|378
5ZEB|1|A|G|379
5ZEB|1|A|A|380
5ZEB|1|A|A|381
5ZEB|1|A|A|382
*
5ZEB|1|A|U|398
5ZEB|1|A|G|399
5ZEB|1|A|C|400
5ZEB|1|A|C|401
*
5ZEB|1|A|G|405
5ZEB|1|A|A|406
5ZEB|1|A|C|407
*
5ZEB|1|A|G|419
5ZEB|1|A|G|420
5ZEB|1|A|U|421
5ZEB|1|A|A|422
5ZEB|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24