J4_5ZEB_007
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEB_007 not in the Motif Atlas
- Homologous match to J4_9DFE_007
- Geometric discrepancy: 0.0891
- The information below is about J4_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5ZEB|1|A|G|1989
5ZEB|1|A|A|1990
5ZEB|1|A|C|1991
5ZEB|1|A|U|1992
5ZEB|1|A|G|1993
*
5ZEB|1|A|C|2005
5ZEB|1|A|A|2006
5ZEB|1|A|C|2007
5ZEB|1|A|A|2008
5ZEB|1|A|G|2009
*
5ZEB|1|A|U|2044
5ZEB|1|A|G|2045
5ZEB|1|A|A|2046
5ZEB|1|A|C|2047
*
5ZEB|1|A|G|2199
5ZEB|1|A|U|2200
5ZEB|1|A|A|2201
5ZEB|1|A|A|2202
5ZEB|1|A|C|2203
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- Conserved domain protein
Coloring options: