J4_5ZEB_008
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5ZEB|1|A|U|2195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEB_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0913
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
5ZEB|1|A|C|2050
5ZEB|1|A|U|2051
5ZEB|1|A|G|2052
*
5ZEB|1|A|C|2129
5ZEB|1|A|G|2130
*
5ZEB|1|A|C|2148
5ZEB|1|A|C|2149
5ZEB|1|A|U|2150
5ZEB|1|A|A|2151
5ZEB|1|A|A|2152
5ZEB|1|A|G|2153
5ZEB|1|A|G|2154
5ZEB|1|A|U|2155
5ZEB|1|A|A|2156
5ZEB|1|A|G|2157
*
5ZEB|1|A|C|2191
5ZEB|1|A|G|2192
5ZEB|1|A|A|2193
5ZEB|1|A|A|2194
5ZEB|1|A|U|2195
5ZEB|1|A|G|2196
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- Conserved domain protein
- Chain v
- Transfer RNA; tRNA
Coloring options: