J4_5ZEB_011

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

5ZEB|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEB|1|a|G|111
5ZEB|1|a|A|112
5ZEB|1|a|G|113
5ZEB|1|a|U|114
5ZEB|1|a|A|115
5ZEB|1|a|A|116
5ZEB|1|a|C|117
5ZEB|1|a|A|118
5ZEB|1|a|C|119
*
5ZEB|1|a|G|238
5ZEB|1|a|G|239
5ZEB|1|a|C|240
*
5ZEB|1|a|G|286
5ZEB|1|a|U|287
5ZEB|1|a|A|288
5ZEB|1|a|G|289
*
5ZEB|1|a|C|311
5ZEB|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17