J4_5ZEB_013
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5ZEB|1|a|A|556, 5ZEB|1|a|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEB_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0762
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5ZEB|1|a|G|555
5ZEB|1|a|A|556
5ZEB|1|a|G|557
*
5ZEB|1|a|C|744
5ZEB|1|a|G|745
5ZEB|1|a|A|746
5ZEB|1|a|A|747
5ZEB|1|a|A|748
5ZEB|1|a|G|749
*
5ZEB|1|a|C|790
5ZEB|1|a|C|791
5ZEB|1|a|G|792
5ZEB|1|a|U|793
5ZEB|1|a|A|794
5ZEB|1|a|A|795
5ZEB|1|a|A|796
5ZEB|1|a|C|797
5ZEB|1|a|G|798
5ZEB|1|a|G|799
5ZEB|1|a|U|800
5ZEB|1|a|G|801
*
5ZEB|1|a|C|861
5ZEB|1|a|C|862
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain u
- Conserved domain protein
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