J4_5ZEB_015
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5ZEB|1|v|U|8, 5ZEB|1|v|U|48, 5ZEB|1|v|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEB_015 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2044
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5ZEB|1|v|G|7
5ZEB|1|v|U|8
5ZEB|1|v|G|9
5ZEB|1|v|G|10
*
5ZEB|1|v|C|26
5ZEB|1|v|G|27
5ZEB|1|v|U|28
*
5ZEB|1|v|A|44
5ZEB|1|v|A|45
5ZEB|1|v|G|46
5ZEB|1|v|A|47
5ZEB|1|v|U|48
5ZEB|1|v|C|49
5ZEB|1|v|G|50
*
5ZEB|1|v|C|66
5ZEB|1|v|C|67
Current chains
- Chain v
- P-tRNAfMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
Coloring options: