J4_5ZEP_008

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5ZEP|1|A|U|2195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZEP_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0913

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5ZEP|1|A|C|2050
5ZEP|1|A|U|2051
5ZEP|1|A|G|2052
*
5ZEP|1|A|C|2129
5ZEP|1|A|G|2130
*
5ZEP|1|A|C|2148
5ZEP|1|A|C|2149
5ZEP|1|A|U|2150
5ZEP|1|A|A|2151
5ZEP|1|A|A|2152
5ZEP|1|A|G|2153
5ZEP|1|A|G|2154
5ZEP|1|A|U|2155
5ZEP|1|A|A|2156
5ZEP|1|A|G|2157
*
5ZEP|1|A|C|2191
5ZEP|1|A|G|2192
5ZEP|1|A|A|2193
5ZEP|1|A|A|2194
5ZEP|1|A|U|2195
5ZEP|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain u

Conserved domain protein