J4_5ZEP_011

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

5ZEP|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEP|1|a|G|111
5ZEP|1|a|A|112
5ZEP|1|a|G|113
5ZEP|1|a|U|114
5ZEP|1|a|A|115
5ZEP|1|a|A|116
5ZEP|1|a|C|117
5ZEP|1|a|A|118
5ZEP|1|a|C|119
*
5ZEP|1|a|G|238
5ZEP|1|a|G|239
5ZEP|1|a|C|240
*
5ZEP|1|a|G|286
5ZEP|1|a|U|287
5ZEP|1|a|A|288
5ZEP|1|a|G|289
*
5ZEP|1|a|C|311
5ZEP|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17