J4_5ZEP_014
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 5ZEP|1|w|U|8, 5ZEP|1|w|U|48, 5ZEP|1|w|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEP_014 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.5431
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5ZEP|1|w|G|7
5ZEP|1|w|U|8
5ZEP|1|w|G|9
5ZEP|1|w|G|10
*
5ZEP|1|w|C|26
5ZEP|1|w|G|27
5ZEP|1|w|U|28
5ZEP|1|w|C|29
*
5ZEP|1|w|G|43
5ZEP|1|w|A|44
5ZEP|1|w|A|45
5ZEP|1|w|G|46
5ZEP|1|w|A|47
5ZEP|1|w|U|48
5ZEP|1|w|C|49
5ZEP|1|w|G|50
*
5ZEP|1|w|C|66
5ZEP|1|w|C|67
Current chains
- Chain w
- E-tRNAfMet
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
Coloring options: