J4_5ZEY_001

3D structure

PDB id

5ZEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis Trans-translation state 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12.5 Å

Loop

Sequence

GGUGG*CGUC*GAAGAUCGUCG*CGGCCC

Length

26 nucleotides

Bulged bases

5ZEY|1|B|U|8, 5ZEY|1|B|U|48, 5ZEY|1|B|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEY|1|B|G|6
5ZEY|1|B|G|7
5ZEY|1|B|U|8
5ZEY|1|B|G|9
5ZEY|1|B|G|10
*
5ZEY|1|B|C|26
5ZEY|1|B|G|27
5ZEY|1|B|U|28
5ZEY|1|B|C|29
*
5ZEY|1|B|G|43
5ZEY|1|B|A|44
5ZEY|1|B|A|45
5ZEY|1|B|G|46
5ZEY|1|B|A|47
5ZEY|1|B|U|48
5ZEY|1|B|C|49
5ZEY|1|B|G|50
5ZEY|1|B|U|51
5ZEY|1|B|C|52
5ZEY|1|B|G|53
*
5ZEY|1|B|C|63
5ZEY|1|B|G|64
5ZEY|1|B|G|65
5ZEY|1|B|C|66
5ZEY|1|B|C|67
5ZEY|1|B|C|68

Current chains

Chain B

A-tRNAfMet

Nearby chains

Chain A

Transfer-messenger RNA; tmRNA

Chain C

SsrA-binding protein