J4_6AGB_001
3D structure
- PDB id
- 6AGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Ribonuclease P
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GGAACACAGUG*CGUUUGA*UCUGUUGAGUGCAAUCGUAGGAC*GAACCCGAU
- Length
- 50 nucleotides
- Bulged bases
- 6AGB|1|A|A|101, 6AGB|1|A|C|102, 6AGB|1|A|C|104, 6AGB|1|A|U|268, 6AGB|1|A|U|304, 6AGB|1|A|G|305, 6AGB|1|A|U|306, 6AGB|1|A|G|308, 6AGB|1|A|C|313, 6AGB|1|A|A|314, 6AGB|1|A|C|342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6AGB|1|A|G|98
6AGB|1|A|G|99
6AGB|1|A|A|100
6AGB|1|A|A|101
6AGB|1|A|C|102
6AGB|1|A|A|103
6AGB|1|A|C|104
6AGB|1|A|A|105
6AGB|1|A|G|106
6AGB|1|A|U|107
6AGB|1|A|G|108
*
6AGB|1|A|C|264
6AGB|1|A|G|265
6AGB|1|A|U|266
6AGB|1|A|U|267
6AGB|1|A|U|268
6AGB|1|A|G|269
6AGB|1|A|A|270
*
6AGB|1|A|U|302
6AGB|1|A|C|303
6AGB|1|A|U|304
6AGB|1|A|G|305
6AGB|1|A|U|306
6AGB|1|A|U|307
6AGB|1|A|G|308
6AGB|1|A|A|309
6AGB|1|A|G|310
6AGB|1|A|U|311
6AGB|1|A|G|312
6AGB|1|A|C|313
6AGB|1|A|A|314
6AGB|1|A|A|315
6AGB|1|A|U|316
6AGB|1|A|C|317
6AGB|1|A|G|318
6AGB|1|A|U|319
6AGB|1|A|A|320
6AGB|1|A|G|321
6AGB|1|A|G|322
6AGB|1|A|A|323
6AGB|1|A|C|324
*
6AGB|1|A|G|337
6AGB|1|A|A|338
6AGB|1|A|A|339
6AGB|1|A|C|340
6AGB|1|A|C|341
6AGB|1|A|C|342
6AGB|1|A|G|343
6AGB|1|A|A|344
6AGB|1|A|U|345
Current chains
- Chain A
- Ribonuclease P RNA
Nearby chains
- Chain B
- Ribonucleases P/MRP protein subunit POP1
- Chain D
- RNases MRP/P 32.9 kDa subunit
- Chain E
- Ribonuclease P/MRP protein subunit POP5
- Chain G
- Ribonucleases P/MRP protein subunit POP7
- Chain H
- Ribonucleases P/MRP protein subunit POP8
- Chain I
- Ribonuclease P/MRP protein subunit RPP1
- Chain J
- Ribonuclease P/MRP protein subunit RPP1
Coloring options: