J4_6AH3_003
3D structure
- PDB id
- 6AH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 6AH3|1|T|U|8, 6AH3|1|T|U|47, 6AH3|1|T|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6AH3_003 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1751
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
6AH3|1|T|U|7
6AH3|1|T|U|8
6AH3|1|T|A|9
6AH3|1|T|G|10
*
6AH3|1|T|C|25
6AH3|1|T|G|26
6AH3|1|T|C|27
*
6AH3|1|T|G|43
6AH3|1|T|A|44
6AH3|1|T|G|45
6AH3|1|T|G|46
6AH3|1|T|U|47
6AH3|1|T|C|48
6AH3|1|T|C|49
*
6AH3|1|T|G|65
6AH3|1|T|A|66
Current chains
- Chain T
- pre-tRNA
Nearby chains
- Chain A
- Nuclear RNase P
- Chain D
- RNases MRP/P 32.9 kDa subunit
- Chain J
- Ribonuclease P/MRP protein subunit RPP1
Coloring options: