J4_6BOK_005
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOK_005 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0865
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6BOK|1|B|C|297
6BOK|1|B|G|298
6BOK|1|B|A|299
6BOK|1|B|A|300
6BOK|1|B|G|301
*
6BOK|1|B|C|316
6BOK|1|B|G|317
6BOK|1|B|C|318
6BOK|1|B|C|319
*
6BOK|1|B|G|323
6BOK|1|B|A|324
6BOK|1|B|G|325
*
6BOK|1|B|C|337
6BOK|1|B|G|338
6BOK|1|B|U|339
6BOK|1|B|A|340
6BOK|1|B|G|341
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L24
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