J4_6BOK_009

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6BOK|1|B|A|1444|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOK_009 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1915

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|B|G|1444
6BOK|1|B|A|1444|||B
6BOK|1|B|C|1445
*
6BOK|1|B|G|1466
6BOK|1|B|C|1467
*
6BOK|1|B|G|1525
6BOK|1|B|G|1526
*
6BOK|1|B|C|1546|||B
6BOK|1|B|C|1547

Current chains

Chain B

23S ribosomal RNA

Nearby chains