J4_6BOK_022

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6BOK|1|EB|G|1271, 6BOK|1|EB|A|1272, 6BOK|1|EB|U|1273, 6BOK|1|EB|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOK_022 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0685

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6BOK|1|EB|C|1270
6BOK|1|EB|G|1271
6BOK|1|EB|A|1272
6BOK|1|EB|U|1273
6BOK|1|EB|A|1274
6BOK|1|EB|A|1275
6BOK|1|EB|A|1276
*
6BOK|1|EB|U|1294
6BOK|1|EB|C|1295
*
6BOK|1|EB|G|1645
6BOK|1|EB|C|1646
6BOK|1|EB|G|1647
6BOK|1|EB|C|1648
*
6BOK|1|EB|G|2009
6BOK|1|EB|G|2010

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain FC

50S ribosomal protein L32

Chain RB

50S ribosomal protein L17

Chain WB

50S ribosomal protein L22