J4_6BOK_026

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOK_026 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0647

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BOK|1|EB|G|1772
6BOK|1|EB|A|1773
6BOK|1|EB|C|1774
6BOK|1|EB|U|1775
6BOK|1|EB|G|1776
*
6BOK|1|EB|C|1788
6BOK|1|EB|A|1789
6BOK|1|EB|C|1790
6BOK|1|EB|A|1791
6BOK|1|EB|G|1792
*
6BOK|1|EB|C|1827
6BOK|1|EB|G|1828
6BOK|1|EB|A|1829
6BOK|1|EB|C|1830
*
6BOK|1|EB|G|1975
6BOK|1|EB|U|1976
6BOK|1|EB|A|1977
6BOK|1|EB|A|1978
6BOK|1|EB|C|1979

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain DB

Small subunit ribosomal RNA; SSU rRNA

Chain HB

50S ribosomal protein L2