J4_6BOK_032
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6BOK|1|LC|4SU|8, 6BOK|1|LC|U|47, 6BOK|1|LC|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOK_032 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1341
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6BOK|1|LC|G|7
6BOK|1|LC|4SU|8
6BOK|1|LC|G|9
6BOK|1|LC|G|10
*
6BOK|1|LC|C|25
6BOK|1|LC|G|26
6BOK|1|LC|U|27
*
6BOK|1|LC|A|43
6BOK|1|LC|A|44
6BOK|1|LC|G|45
6BOK|1|LC|G|46
6BOK|1|LC|U|47
6BOK|1|LC|C|48
6BOK|1|LC|G|49
*
6BOK|1|LC|C|65
6BOK|1|LC|C|66
Current chains
- Chain LC
- 16S ribosomal RNA
Nearby chains
- Chain DB
- Small subunit ribosomal RNA; SSU rRNA
- Chain EB
- Large subunit ribosomal RNA; LSU rRNA
- Chain HD
- Peptide chain release factor 1
- Chain QB
- 50S ribosomal protein L16
- Chain XC
- 30S ribosomal protein S13
Coloring options: