J4_6BU8_013

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6BU8|1|A|C|576, 6BU8|1|A|A|815, 6BU8|1|A|C|817, 6BU8|1|A|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BU8_013 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.113

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6BU8|1|A|G|575
6BU8|1|A|C|576
6BU8|1|A|G|577
*
6BU8|1|A|C|764
6BU8|1|A|G|765
6BU8|1|A|A|766
6BU8|1|A|A|767
6BU8|1|A|A|768
6BU8|1|A|G|769
*
6BU8|1|A|C|810
6BU8|1|A|C|811
6BU8|1|A|G|812
6BU8|1|A|U|813
6BU8|1|A|A|814
6BU8|1|A|A|815
6BU8|1|A|A|816
6BU8|1|A|C|817
6BU8|1|A|G|818
6BU8|1|A|A|819
6BU8|1|A|U|820
6BU8|1|A|G|821
*
6BU8|1|A|C|879
6BU8|1|A|C|880

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17

Chain U

30S ribosomal protein S21