J4_6BU8_016

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

6BU8|1|Y|U|8, 6BU8|1|Y|U|47, 6BU8|1|Y|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BU8_016 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.298

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6BU8|1|Y|A|7
6BU8|1|Y|U|8
6BU8|1|Y|A|9
6BU8|1|Y|G|10
*
6BU8|1|Y|C|25
6BU8|1|Y|A|26
6BU8|1|Y|G|27
*
6BU8|1|Y|C|43
6BU8|1|Y|G|44
6BU8|1|Y|U|45
6BU8|1|Y|G|46
6BU8|1|Y|U|47
6BU8|1|Y|C|48
6BU8|1|Y|C|49
*
6BU8|1|Y|G|65
6BU8|1|Y|U|66

Current chains

Chain Y

tRNAPhe

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA