J4_6BUW_008

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6BUW|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BUW_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0868

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6BUW|1|RA|G|1310
6BUW|1|RA|G|1311
6BUW|1|RA|U|1312
6BUW|1|RA|U|1313
6BUW|1|RA|C|1314
*
6BUW|1|RA|G|1338
6BUW|1|RA|G|1339
6BUW|1|RA|U|1340
6BUW|1|RA|U|1341
6BUW|1|RA|A|1342
6BUW|1|RA|G|1343
*
6BUW|1|RA|C|1404
6BUW|1|RA|U|1405
*
6BUW|1|RA|A|1597
6BUW|1|RA|C|1598
6BUW|1|RA|C|1599
6BUW|1|RA|C|1600
6BUW|1|RA|G|1601
6BUW|1|RA|U|1602
6BUW|1|RA|A|1603
6BUW|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23