J4_6C4H_001

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C4H_001 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0706

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6C4H|1|A|A|1772
6C4H|1|A|A|1773
6C4H|1|A|C|1774
6C4H|1|A|U|1775
6C4H|1|A|G|1776
*
6C4H|1|A|C|1788
6C4H|1|A|A|1789
6C4H|1|A|C|1790
6C4H|1|A|A|1791
6C4H|1|A|G|1792
*
6C4H|1|A|U|1827
6C4H|1|A|G|1828
6C4H|1|A|A|1829
6C4H|1|A|C|1830
*
6C4H|1|A|G|1975
6C4H|1|A|U|1976
6C4H|1|A|A|1977
6C4H|1|A|A|1978
6C4H|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2