J4_6C4I_015
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6C4I|1|x|U|7, 6C4I|1|x|U|47, 6C4I|1|x|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C4I_015 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2428
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6C4I|1|x|G|6
6C4I|1|x|U|7
6C4I|1|x|G|8
6C4I|1|x|G|9
*
6C4I|1|x|C|25
6C4I|1|x|G|26
6C4I|1|x|U|27
*
6C4I|1|x|A|43
6C4I|1|x|A|44
6C4I|1|x|G|45
6C4I|1|x|G|46
6C4I|1|x|U|47
6C4I|1|x|C|48
6C4I|1|x|G|49
*
6C4I|1|x|C|65
6C4I|1|x|C|66
Current chains
- Chain x
- E-site or P-site tRNA fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain v
- Peptide chain release factor 2
Coloring options: