J4_6C5L_005
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAG*CAG*CGUGUCCUUGG*CCGAGUC
- Length
- 26 nucleotides
- Bulged bases
- 6C5L|1|AW|U|47, 6C5L|1|AW|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6C5L|1|AW|G|6
6C5L|1|AW|A|7
6C5L|1|AW|U|8
6C5L|1|AW|A|9
6C5L|1|AW|G|10
*
6C5L|1|AW|C|25
6C5L|1|AW|A|26
6C5L|1|AW|G|27
*
6C5L|1|AW|C|43
6C5L|1|AW|G|44
6C5L|1|AW|U|45
6C5L|1|AW|G|46
6C5L|1|AW|U|47
6C5L|1|AW|C|48
6C5L|1|AW|C|49
6C5L|1|AW|U|50
6C5L|1|AW|U|51
6C5L|1|AW|G|52
6C5L|1|AW|G|53
*
6C5L|1|AW|C|61
6C5L|1|AW|C|62
6C5L|1|AW|G|63
6C5L|1|AW|A|64
6C5L|1|AW|G|65
6C5L|1|AW|U|66
6C5L|1|AW|C|67
Current chains
- Chain AW
- E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain B6
- 50S ribosomal protein L33
- Chain BC
- 50S ribosomal protein L1
Coloring options: