J4_6C5L_013

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAGUUGG*UG*CCGCAGUGAACAGG*CGC

Length

28 nucleotides

Bulged bases

6C5L|1|BA|G|1758, 6C5L|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|BA|G|1674
6C5L|1|BA|C|1675
6C5L|1|BA|A|1676
6C5L|1|BA|A|1677
6C5L|1|BA|G|1678
6C5L|1|BA|U|1679
6C5L|1|BA|U|1680
6C5L|1|BA|G|1681
6C5L|1|BA|G|1682
*
6C5L|1|BA|U|1706
6C5L|1|BA|G|1707
*
6C5L|1|BA|C|1751
6C5L|1|BA|C|1752
6C5L|1|BA|G|1753
6C5L|1|BA|C|1754
6C5L|1|BA|A|1755
6C5L|1|BA|G|1756
6C5L|1|BA|U|1757
6C5L|1|BA|G|1758
6C5L|1|BA|A|1759
6C5L|1|BA|A|1760
6C5L|1|BA|C|1761
6C5L|1|BA|A|1762
6C5L|1|BA|G|1763
6C5L|1|BA|G|1764
*
6C5L|1|BA|C|1988
6C5L|1|BA|G|1989
6C5L|1|BA|C|1990

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19