J4_6C5L_019

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAG*CAUGUG*CAAAG*CGCU

Length

19 nucleotides

Bulged bases

6C5L|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|CA|A|141
6C5L|1|CA|G|142
6C5L|1|CA|A|143
6C5L|1|CA|G|144
*
6C5L|1|CA|C|178
6C5L|1|CA|A|179
6C5L|1|CA|U|180
6C5L|1|CA|G|181
6C5L|1|CA|U|182
6C5L|1|CA|G|183
*
6C5L|1|CA|C|194
6C5L|1|CA|A|195
6C5L|1|CA|A|196
6C5L|1|CA|A|197
6C5L|1|CA|G|198
*
6C5L|1|CA|C|219
6C5L|1|CA|G|220
6C5L|1|CA|C|221
6C5L|1|CA|U|222

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20