J4_6C5L_025

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG

Length

42 nucleotides

Bulged bases

6C5L|1|DA|A|654, 6C5L|1|DA|G|654|||A, 6C5L|1|DA|C|654|||F, 6C5L|1|DA|C|654|||I, 6C5L|1|DA|C|654|||K

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|C|601
6C5L|1|DA|G|602
6C5L|1|DA|A|603
6C5L|1|DA|G|604
*
6C5L|1|DA|C|624
6C5L|1|DA|G|625
6C5L|1|DA|U|626
6C5L|1|DA|A|627
6C5L|1|DA|G|628
*
6C5L|1|DA|C|635
6C5L|1|DA|G|636
6C5L|1|DA|A|637
6C5L|1|DA|G|638
*
6C5L|1|DA|C|650
6C5L|1|DA|G|651
6C5L|1|DA|C|652
6C5L|1|DA|A|653
6C5L|1|DA|A|654
6C5L|1|DA|G|654|||A
6C5L|1|DA|C|654|||B
6C5L|1|DA|G|654|||C
6C5L|1|DA|G|654|||D
6C5L|1|DA|G|654|||E
6C5L|1|DA|C|654|||F
6C5L|1|DA|C|654|||G
6C5L|1|DA|G|654|||H
6C5L|1|DA|C|654|||I
6C5L|1|DA|A|654|||J
6C5L|1|DA|C|654|||K
6C5L|1|DA|G|654|||L
6C5L|1|DA|C|654|||M
6C5L|1|DA|G|654|||N
6C5L|1|DA|G|654|||O
6C5L|1|DA|C|654|||P
6C5L|1|DA|C|654|||Q
6C5L|1|DA|C|654|||R
6C5L|1|DA|G|654|||S
6C5L|1|DA|C|654|||T
6C5L|1|DA|A|654|||U
6C5L|1|DA|A|654|||V
6C5L|1|DA|A|655
6C5L|1|DA|G|656

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15