J4_6C5L_032

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6C5L|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_032 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1035

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6C5L|1|DA|U|1833
6C5L|1|DA|U|1834
6C5L|1|DA|G|1835
*
6C5L|1|DA|C|1905
6C5L|1|DA|G|1906
*
6C5L|1|DA|C|1924
6C5L|1|DA|C|1925
6C5L|1|DA|U|1926
6C5L|1|DA|A|1927
6C5L|1|DA|A|1928
6C5L|1|DA|G|1929
6C5L|1|DA|G|1930
6C5L|1|DA|U|1931
6C5L|1|DA|A|1932
6C5L|1|DA|G|1933
*
6C5L|1|DA|C|1967
6C5L|1|DA|G|1968
6C5L|1|DA|A|1969
6C5L|1|DA|A|1970
6C5L|1|DA|A|1971
6C5L|1|DA|A|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2