J4_6CAE_018

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CAE_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0572

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6CAE|1|2A|C|297
6CAE|1|2A|G|298
6CAE|1|2A|A|299
6CAE|1|2A|A|300
6CAE|1|2A|G|301
*
6CAE|1|2A|C|316
6CAE|1|2A|G|317
6CAE|1|2A|C|318
6CAE|1|2A|C|319
*
6CAE|1|2A|G|323
6CAE|1|2A|A|324
6CAE|1|2A|G|325
*
6CAE|1|2A|C|337
6CAE|1|2A|G|338
6CAE|1|2A|U|339
6CAE|1|2A|A|340
6CAE|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24