J4_6CAE_032
3D structure
- PDB id
- 6CAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAU(4SU)AG*CAC*GGG(7MG)UCGGCG*CGUCAUC
- Length
- 26 nucleotides
- Bulged bases
- 6CAE|1|2y|4SU|8, 6CAE|1|2y|U|47, 6CAE|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6CAE|1|2y|G|5
6CAE|1|2y|A|6
6CAE|1|2y|U|7
6CAE|1|2y|4SU|8
6CAE|1|2y|A|9
6CAE|1|2y|G|10
*
6CAE|1|2y|C|25
6CAE|1|2y|A|26
6CAE|1|2y|C|27
*
6CAE|1|2y|G|43
6CAE|1|2y|G|44
6CAE|1|2y|G|45
6CAE|1|2y|7MG|46
6CAE|1|2y|U|47
6CAE|1|2y|C|48
6CAE|1|2y|G|49
6CAE|1|2y|G|50
6CAE|1|2y|C|51
6CAE|1|2y|G|52
*
6CAE|1|2y|C|62
6CAE|1|2y|G|63
6CAE|1|2y|U|64
6CAE|1|2y|C|65
6CAE|1|2y|A|66
6CAE|1|2y|U|67
6CAE|1|2y|C|68
Current chains
- Chain 2y
- A-site and E-site tRNAs
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: