J4_6CFJ_002

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFJ_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0774

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6CFJ|1|1A|C|321
6CFJ|1|1A|G|322
6CFJ|1|1A|A|323
6CFJ|1|1A|A|324
6CFJ|1|1A|G|325
*
6CFJ|1|1A|C|340
6CFJ|1|1A|G|341
6CFJ|1|1A|C|342
6CFJ|1|1A|C|343
*
6CFJ|1|1A|G|347
6CFJ|1|1A|A|348
6CFJ|1|1A|G|349
*
6CFJ|1|1A|C|361
6CFJ|1|1A|G|362
6CFJ|1|1A|U|363
6CFJ|1|1A|A|364
6CFJ|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24