J4_6CFJ_003
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6CFJ|1|1A|G|1317, 6CFJ|1|1A|A|1318, 6CFJ|1|1A|U|1319, 6CFJ|1|1A|G|1694
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6CFJ_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0691
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6CFJ|1|1A|C|1316
6CFJ|1|1A|G|1317
6CFJ|1|1A|A|1318
6CFJ|1|1A|U|1319
6CFJ|1|1A|A|1320
6CFJ|1|1A|A|1321
6CFJ|1|1A|A|1322
*
6CFJ|1|1A|U|1340
6CFJ|1|1A|C|1341
*
6CFJ|1|1A|G|1692
6CFJ|1|1A|C|1693
6CFJ|1|1A|G|1694
6CFJ|1|1A|C|1695
*
6CFJ|1|1A|G|2031
6CFJ|1|1A|G|2032
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
Coloring options: