J4_6CFJ_028

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGAG*CAUGUG*CAAAG*CGCU

Length

19 nucleotides

Bulged bases

6CFJ|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2a|A|141
6CFJ|1|2a|G|142
6CFJ|1|2a|A|143
6CFJ|1|2a|G|144
*
6CFJ|1|2a|C|178
6CFJ|1|2a|A|179
6CFJ|1|2a|U|180
6CFJ|1|2a|G|181
6CFJ|1|2a|U|182
6CFJ|1|2a|G|183
*
6CFJ|1|2a|C|194
6CFJ|1|2a|A|195
6CFJ|1|2a|A|196
6CFJ|1|2a|A|197
6CFJ|1|2a|G|198
*
6CFJ|1|2a|C|219
6CFJ|1|2a|G|220
6CFJ|1|2a|C|221
6CFJ|1|2a|U|222

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20