J4_6CFK_004

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6CFK|1|1A|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0602

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CFK|1|1A|G|1356
6CFK|1|1A|G|1357
6CFK|1|1A|U|1358
6CFK|1|1A|U|1359
6CFK|1|1A|C|1360
*
6CFK|1|1A|G|1384
6CFK|1|1A|G|1385
6CFK|1|1A|U|1386
6CFK|1|1A|U|1387
6CFK|1|1A|A|1388
6CFK|1|1A|G|1389
*
6CFK|1|1A|C|1450
6CFK|1|1A|U|1451
*
6CFK|1|1A|A|1643
6CFK|1|1A|C|1644
6CFK|1|1A|C|1645
6CFK|1|1A|C|1646
6CFK|1|1A|G|1647
6CFK|1|1A|U|1648
6CFK|1|1A|A|1649
6CFK|1|1A|C|1650

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23