J4_6CFK_017

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6CFK|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_017 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0673

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CFK|1|2A|G|1310
6CFK|1|2A|G|1311
6CFK|1|2A|U|1312
6CFK|1|2A|U|1313
6CFK|1|2A|C|1314
*
6CFK|1|2A|G|1338
6CFK|1|2A|G|1339
6CFK|1|2A|U|1340
6CFK|1|2A|U|1341
6CFK|1|2A|A|1342
6CFK|1|2A|G|1343
*
6CFK|1|2A|C|1404
6CFK|1|2A|U|1405
*
6CFK|1|2A|A|1597
6CFK|1|2A|C|1598
6CFK|1|2A|C|1599
6CFK|1|2A|C|1600
6CFK|1|2A|G|1601
6CFK|1|2A|U|1602
6CFK|1|2A|A|1603
6CFK|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23