J4_6CFK_021

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6CFK|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_021 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0599

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6CFK|1|2A|U|1833
6CFK|1|2A|U|1834
6CFK|1|2A|G|1835
*
6CFK|1|2A|C|1905
6CFK|1|2A|G|1906
*
6CFK|1|2A|C|1924
6CFK|1|2A|C|1925
6CFK|1|2A|U|1926
6CFK|1|2A|A|1927
6CFK|1|2A|A|1928
6CFK|1|2A|G|1929
6CFK|1|2A|G|1930
6CFK|1|2A|U|1931
6CFK|1|2A|A|1932
6CFK|1|2A|G|1933
*
6CFK|1|2A|C|1967
6CFK|1|2A|G|1968
6CFK|1|2A|A|1969
6CFK|1|2A|A|1970
6CFK|1|2A|A|1971
6CFK|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA