3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
6CFK|1|2A|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CFK_021 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0599
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6CFK|1|2A|U|1833
6CFK|1|2A|U|1834
6CFK|1|2A|G|1835
*
6CFK|1|2A|C|1905
6CFK|1|2A|G|1906
*
6CFK|1|2A|C|1924
6CFK|1|2A|C|1925
6CFK|1|2A|U|1926
6CFK|1|2A|A|1927
6CFK|1|2A|A|1928
6CFK|1|2A|G|1929
6CFK|1|2A|G|1930
6CFK|1|2A|U|1931
6CFK|1|2A|A|1932
6CFK|1|2A|G|1933
*
6CFK|1|2A|C|1967
6CFK|1|2A|G|1968
6CFK|1|2A|A|1969
6CFK|1|2A|A|1970
6CFK|1|2A|A|1971
6CFK|1|2A|A|1972

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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